read coor pdb HR1958_R3Cons_em_bcr3.pdb
all
rmsd coor heavy 4A-16A,19A-30A,33A-67A,71A-139A
ave
resOrd_rmsd_heavy
rmsd coor backbone 4A-16A,19A-30A,33A-67A,71A-139A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit