PyMOL>load ./GMR137_NMR_em_bcr3.pdb.iupac
HEADER    BIOSYNTHETIC PROTEIN                    30-JUN-08   2K5P
TITLE     NMR SOLUTION STRUCTURE OF A THIAMINE BIOSYNTHESIS PROTEIN
TITLE    2 FROM GEOBACTER METALLIREDUCENS: NORTHEAST STRUCTURAL
TITLE    3 GENOMICS CONSORTIUM TARGET GMR137
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: THIAMINE-BIOSYNTHESIS PROTEIN;
COMPND   3 CHAIN: A;
COMPND   4 SYNONYM: THIS PROTEIN;
COMPND   5 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./GMR137_NMR_em_bcr3.pdb.iupac" loaded as "GMR137_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 1180 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color2, [0, 73, 255]
 Color: "color2" defined as [ 0.000, 0.286, 1.000 ].
PyMOL>color color2, resi 2
 Executive: Colored 14 atoms.
PyMOL>set_color color3, [0, 19, 255]
 Color: "color3" defined as [ 0.000, 0.075, 1.000 ].
PyMOL>color color3, resi 3
 Executive: Colored 19 atoms.
PyMOL>set_color color5, [0, 242, 255]
 Color: "color5" defined as [ 0.000, 0.949, 1.000 ].
PyMOL>color color5, resi 5
 Executive: Colored 16 atoms.
PyMOL>set_color color6, [0, 139, 255]
 Color: "color6" defined as [ 0.000, 0.545, 1.000 ].
PyMOL>color color6, resi 6
 Executive: Colored 14 atoms.
PyMOL>set_color color18, [0, 7, 255]
 Color: "color18" defined as [ 0.000, 0.027, 1.000 ].
PyMOL>color color18, resi 18
 Executive: Colored 19 atoms.
PyMOL>set_color color19, [0, 29, 255]
 Color: "color19" defined as [ 0.000, 0.114, 1.000 ].
PyMOL>color color19, resi 19
 Executive: Colored 14 atoms.
PyMOL>set_color color20, [0, 193, 255]
 Color: "color20" defined as [ 0.000, 0.757, 1.000 ].
PyMOL>color color20, resi 20
 Executive: Colored 16 atoms.
PyMOL>set_color color23, [0, 121, 255]
 Color: "color23" defined as [ 0.000, 0.475, 1.000 ].
PyMOL>color color23, resi 23
 Executive: Colored 19 atoms.
PyMOL>set_color color36, [0, 234, 255]
 Color: "color36" defined as [ 0.000, 0.918, 1.000 ].
PyMOL>color color36, resi 36
 Executive: Colored 14 atoms.
PyMOL>set_color color37, [0, 255, 160]
 Color: "color37" defined as [ 0.000, 1.000, 0.627 ].
PyMOL>color color37, resi 37
 Executive: Colored 16 atoms.
PyMOL>set_color color39, [0, 250, 255]
 Color: "color39" defined as [ 0.000, 0.980, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 19 atoms.
PyMOL>set_color color44, [0, 70, 255]
 Color: "color44" defined as [ 0.000, 0.275, 1.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 19 atoms.
PyMOL>set_color color58, [0, 11, 255]
 Color: "color58" defined as [ 0.000, 0.043, 1.000 ].
PyMOL>color color58, resi 58
 Executive: Colored 12 atoms.
PyMOL>set_color color60, [0, 243, 255]
 Color: "color60" defined as [ 0.000, 0.953, 1.000 ].
PyMOL>color color60, resi 60
 Executive: Colored 16 atoms.
PyMOL>set_color color61, [0, 15, 255]
 Color: "color61" defined as [ 0.000, 0.059, 1.000 ].
PyMOL>color color61, resi 61
 Executive: Colored 15 atoms.
PyMOL>set_color color62, [0, 255, 160]
 Color: "color62" defined as [ 0.000, 1.000, 0.627 ].
PyMOL>color color62, resi 62
 Executive: Colored 20 atoms.
PyMOL>set_color color65, [0, 139, 255]
 Color: "color65" defined as [ 0.000, 0.545, 1.000 ].
PyMOL>color color65, resi 65
 Executive: Colored 20 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.39 sec. = 9265.0 frames/hour (0.39 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit