PyMOL>load ./ER382A_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   11-DEC-08   3FIF
TITLE     CRYSTAL STRUCTURE OF THE YGDR PROTEIN FROM E.COLI. NORTHEAST
TITLE    2 STRUCTURAL GENOMICS TARGET ER382A.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: UNCHARACTERIZED LIPOPROTEIN YGDR;
COMPND   3 CHAIN: A, B, C, D, E, F, G, H;
COMPND   4 ENGINEERED: YES;
COMPND   5 MOL_ID: 2;
COMPND   6 MOLECULE: UNCHARACTERIZED LIGAND;
COMPND   7 CHAIN: Y
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 1 symmetry operators.
 CmdLoad: "./ER382A_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 12 atoms.
PyMOL>color cyan,ss s
 Executive: Colored 527 atoms.
PyMOL>color gray,ss ""+l
 Executive: Colored 6179 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 2.78 sec. = 1295.5 frames/hour (2.78 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 1356 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 1356 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 1.14 sec. = 3148.6 frames/hour (3.92 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit