Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   11-DEC-08   3FIF              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE YGDR PROTEIN FROM E.COLI. NORTHEAST          
  > ReadCoordsPdb(): >> TITLE    2 STRUCTURAL GENOMICS TARGET ER382A.                                   
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: UNCHARACTERIZED LIPOPROTEIN YGDR;                          
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  3558 ATOM records read from file 
  > ReadCoordsPdb(): -->  3558 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     3558 (2137 C, 0 H, 759 O, 638 N, 24 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     452 (Avg. mol. weight: 105.1)
  > INFO_mol: # -- M.W. : 47516.6 g/mol. (47.52 kD)     Estimated RoG <S2>:  22.46 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 452
  > INFO_mol: Radius of Gyration <S2> :    34.1879  angstroms 
  > INFO_mol: Center of Masses: x_cm(-12.504), y_cm(-4.183), z_cm(6.771) 

  > INFO_res:  SDYVMATKDG RMILTDGKPE IDDDTGLVSY HDQQGNAMQI NRDDVSQIIE 
  > INFO_res:  RLEHHSSDYV MATKDGRMIL TDGKPEIDDD TGLVSYHDQQ GNAMQINRDD 
  > INFO_res:  VSQIIERLEH HSSDYVMATK DGRMILTDGK PEIDDDTGLV SYHDQQGNAM 
  > INFO_res:  QINRDDVSQI IERLEHHHSS DYVMATKDGR MILTDGKPEI DDDTGLVSYH 
  > INFO_res:  DQQGNAMQIN RDDVSQIIER LEHHHSSDYV MATKDGRMIL TDGKPEIDDD 
  > INFO_res:  TGLVSYHDAM QINRDDVSQI IERLEHHSSD YVMATKDGRM ILTDGKPEID 
  > INFO_res:  DDTGLVSYHD QQGNAMQINR DDVSQIIERL EHHSSDYVMA TKDGRMILTD 
  > INFO_res:  GKPEIDDDTG LVSYHDQQGN AMQINRDDVS QIIERLEHHH SSDYVMATKD 
  > INFO_res:  GRMILTDGKP EIDDDTGLVS YHDQQGAMQI NRDDVSQIIE RLEHHGGGGG 
  > INFO_res:  GG
  > INFO_res:  
  > INFO_res:  SER  ASP  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  ARG  MET  
  > INFO_res:  ILE  LEU  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  ASP  ASP  
  > INFO_res:  THR  GLY  LEU  VAL  SER  TYR  HIS  ASP  GLN  GLN  GLY  ASN  
  > INFO_res:  ALA  MET  GLN  ILE  ASN  ARG  ASP  ASP  VAL  SER  GLN  ILE  
  > INFO_res:  ILE  GLU  ARG  LEU  GLU  HIS  HIS  SER  SER  ASP  TYR  VAL  
  > INFO_res:  MET  ALA  THR  LYS  ASP  GLY  ARG  MET  ILE  LEU  THR  ASP  
  > INFO_res:  GLY  LYS  PRO  GLU  ILE  ASP  ASP  ASP  THR  GLY  LEU  VAL  
  > INFO_res:  SER  TYR  HIS  ASP  GLN  GLN  GLY  ASN  ALA  MET  GLN  ILE  
  > INFO_res:  ASN  ARG  ASP  ASP  VAL  SER  GLN  ILE  ILE  GLU  ARG  LEU  
  > INFO_res:  GLU  HIS  HIS  SER  SER  ASP  TYR  VAL  MET  ALA  THR  LYS  
  > INFO_res:  ASP  GLY  ARG  MET  ILE  LEU  THR  ASP  GLY  LYS  PRO  GLU  
  > INFO_res:  ILE  ASP  ASP  ASP  THR  GLY  LEU  VAL  SER  TYR  HIS  ASP  
  > INFO_res:  GLN  GLN  GLY  ASN  ALA  MET  GLN  ILE  ASN  ARG  ASP  ASP  
  > INFO_res:  VAL  SER  GLN  ILE  ILE  GLU  ARG  LEU  GLU  HIS  HIS  HIS  
  > INFO_res:  SER  SER  ASP  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  ARG  
  > INFO_res:  MET  ILE  LEU  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  ASP  
  > INFO_res:  ASP  THR  GLY  LEU  VAL  SER  TYR  HIS  ASP  GLN  GLN  GLY  
  > INFO_res:  ASN  ALA  MET  GLN  ILE  ASN  ARG  ASP  ASP  VAL  SER  GLN  
  > INFO_res:  ILE  ILE  GLU  ARG  LEU  GLU  HIS  HIS  HIS  SER  SER  ASP  
  > INFO_res:  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  ARG  MET  ILE  LEU  
  > INFO_res:  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  ASP  ASP  THR  GLY  
  > INFO_res:  LEU  VAL  SER  TYR  HIS  ASP  ALA  MET  GLN  ILE  ASN  ARG  
  > INFO_res:  ASP  ASP  VAL  SER  GLN  ILE  ILE  GLU  ARG  LEU  GLU  HIS  
  > INFO_res:  HIS  SER  SER  ASP  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  
  > INFO_res:  ARG  MET  ILE  LEU  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  
  > INFO_res:  ASP  ASP  THR  GLY  LEU  VAL  SER  TYR  HIS  ASP  GLN  GLN  
  > INFO_res:  GLY  ASN  ALA  MET  GLN  ILE  ASN  ARG  ASP  ASP  VAL  SER  
  > INFO_res:  GLN  ILE  ILE  GLU  ARG  LEU  GLU  HIS  HIS  SER  SER  ASP  
  > INFO_res:  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  ARG  MET  ILE  LEU  
  > INFO_res:  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  ASP  ASP  THR  GLY  
  > INFO_res:  LEU  VAL  SER  TYR  HIS  ASP  GLN  GLN  GLY  ASN  ALA  MET  
  > INFO_res:  GLN  ILE  ASN  ARG  ASP  ASP  VAL  SER  GLN  ILE  ILE  GLU  
  > INFO_res:  ARG  LEU  GLU  HIS  HIS  HIS  SER  SER  ASP  TYR  VAL  MET  
  > INFO_res:  ALA  THR  LYS  ASP  GLY  ARG  MET  ILE  LEU  THR  ASP  GLY  
  > INFO_res:  LYS  PRO  GLU  ILE  ASP  ASP  ASP  THR  GLY  LEU  VAL  SER  
  > INFO_res:  TYR  HIS  ASP  GLN  GLN  GLY  ALA  MET  GLN  ILE  ASN  ARG  
  > INFO_res:  ASP  ASP  VAL  SER  GLN  ILE  ILE  GLU  ARG  LEU  GLU  HIS  
  > INFO_res:  HIS  GLY  GLY  GLY  GLY  GLY  GLY  GLY  
  > INFO_res:  
  > INFO_res:  16 ALA    24 ARG    14 ASN    72 ASP    30 GLN    24 GLU  
  > INFO_res:  38 GLY    27 HIS    40 ILE    24 LEU    16 LYS    24 MET  
  > INFO_res:   8 PRO    31 SER    24 THR    16 TYR    24 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 9 [9] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...