Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total445
intra-residue [i = j]1
sequential [| i - j | = 1]140
medium range [1 < | i - j | < 5]89
long range [| i - j | ≥ 5]215
NOE constraints per restrained residue b9.7
Hydrogen bond constraints:
Total20
long range [| i - j | ≥ 5]17
Dihedral-angle constraints:43
Total number of restricting constraints b508
Total number of restricting constraints per restrained residue b11.0
Restricting long-range constraints per restrained residue b5.0
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å5.6
0.2 - 0.5 Å13.95
> 0.5 Å22.35
RMS of distance violation / constraint0.32 Å
Maximum distance violation d4.64 Å
Dihedral angle violations / structure
1 - 10 °1.2
> 10 °4.5
RMS of dihedral angle violation / constraint31.82 °
Maximum dihedral angle violation d147.40 °
RMSD Values
allorderedeSelectedf
All backbone atoms1.2 Å0.7 Å0.7 Å
All heavy atoms2.0 Å1.1 Å1.2 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.37N/A-1.14
Procheck G-factor e (all dihedral angles)0.06N/A0.35
Verify3D0.260.0385-3.21
ProsaII (-ve)0.440.0759-0.87
MolProbity clashscore2.541.86131.09
Ramachandran Plot Summary from Procheck f
Most favoured regions88.9%
Additionally allowed regions10.8%
Generously allowed regions0.1%
Disallowed regions0.1%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98.8%
Allowed regions1%
Disallowed regions0.2%


a Analysed for residues 1 to 50
b There are 46 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 4A-14A,18A-46A
f Residues selected based on: User defined residues

Selected residue ranges: 4A-14A,17A-46A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4