PyMOL>load ./ER382A_NMR_em_bcr3.pdb
HEADER    MEMBRANE PROTEIN                        15-DEC-06   2JN0
TITLE     SOLUTION NMR STRUCTURE OF THE YGDR PROTEIN FROM ESCHERICHIA
TITLE    2 COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER382A.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YGDR;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: HYPOTHETICAL LIPOPROTEIN YGDR, RESIDUES 2-53;
COMPND   5 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./ER382A_NMR_em_bcr3.pdb" loaded as "ER382A_NMR_em_bcr3".
PyMOL>select selres,resi 4-14+17-46
 Selector: selection "selres" defined with 623 atoms.
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, selres
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 768 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color2, [133,25.5,95.5]
 Color: "color2" defined as [ 0.522, 0.100, 0.375 ].
PyMOL>color color2, resi 2
 Executive: Colored 21 atoms.
PyMOL>set_color color3, [153,25.5,76.5]
 Color: "color3" defined as [ 0.600, 0.100, 0.300 ].
PyMOL>color color3, resi 3
 Executive: Colored 16 atoms.
PyMOL>set_color color4, [0,0,255]
 Color: "color4" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color4, resi 4
 Executive: Colored 17 atoms.
PyMOL>set_color color5, [0,0,255]
 Color: "color5" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color5, resi 5
 Executive: Colored 10 atoms.
PyMOL>set_color color6, [0,0,255]
 Color: "color6" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color6, resi 6
 Executive: Colored 14 atoms.
PyMOL>set_color color7, [0,25,229]
 Color: "color7" defined as [ 0.000, 0.098, 0.898 ].
PyMOL>color color7, resi 7
 Executive: Colored 22 atoms.
PyMOL>set_color color8, [0,12,242]
 Color: "color8" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color8, resi 8
 Executive: Colored 12 atoms.
PyMOL>set_color color9, [0,12,242]
 Color: "color9" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color9, resi 9
 Executive: Colored 7 atoms.
PyMOL>set_color color10, [0,0,255]
 Color: "color10" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color10, resi 10
 Executive: Colored 24 atoms.
PyMOL>set_color color11, [0,0,255]
 Color: "color11" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color11, resi 11
 Executive: Colored 17 atoms.
PyMOL>set_color color12, [0,0,255]
 Color: "color12" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color12, resi 12
 Executive: Colored 19 atoms.
PyMOL>set_color color13, [0,0,255]
 Color: "color13" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color13, resi 13
 Executive: Colored 19 atoms.
PyMOL>set_color color14, [0,12,242]
 Color: "color14" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color14, resi 14
 Executive: Colored 14 atoms.
PyMOL>set_color color15, [0,0,255]
 Color: "color15" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color15, resi 15
 Executive: Colored 12 atoms.
PyMOL>set_color color16, [0,51,204]
 Color: "color16" defined as [ 0.000, 0.200, 0.800 ].
PyMOL>color color16, resi 16
 Executive: Colored 7 atoms.
PyMOL>set_color color17, [209.5,44.5,0]
 Color: "color17" defined as [ 0.822, 0.175, 0.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 22 atoms.
PyMOL>show sticks, res 17
PyMOL>set_color color18, [0,114,140]
 Color: "color18" defined as [ 0.000, 0.447, 0.549 ].
PyMOL>color color18, resi 18
 Executive: Colored 14 atoms.
PyMOL>set_color color19, [0,0,255]
 Color: "color19" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color19, resi 19
 Executive: Colored 15 atoms.
PyMOL>set_color color20, [0,0,255]
 Color: "color20" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color20, resi 20
 Executive: Colored 19 atoms.
PyMOL>set_color color21, [0,12,242]
 Color: "color21" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color21, resi 21
 Executive: Colored 12 atoms.
PyMOL>set_color color22, [0,0,255]
 Color: "color22" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color22, resi 22
 Executive: Colored 12 atoms.
PyMOL>set_color color23, [0,25,229]
 Color: "color23" defined as [ 0.000, 0.098, 0.898 ].
PyMOL>color color23, resi 23
 Executive: Colored 12 atoms.
PyMOL>set_color color24, [0,12,242]
 Color: "color24" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color24, resi 24
 Executive: Colored 14 atoms.
PyMOL>set_color color25, [0,0,255]
 Color: "color25" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color25, resi 25
 Executive: Colored 7 atoms.
PyMOL>set_color color26, [0,0,255]
 Color: "color26" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color26, resi 26
 Executive: Colored 19 atoms.
PyMOL>set_color color27, [0,0,255]
 Color: "color27" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color27, resi 27
 Executive: Colored 16 atoms.
PyMOL>set_color color28, [0,0,255]
 Color: "color28" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color28, resi 28
 Executive: Colored 11 atoms.
PyMOL>set_color color29, [0,0,255]
 Color: "color29" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color29, resi 29
 Executive: Colored 21 atoms.
PyMOL>set_color color30, [0,0,255]
 Color: "color30" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color30, resi 30
 Executive: Colored 18 atoms.
PyMOL>set_color color31, [0,12,242]
 Color: "color31" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color31, resi 31
 Executive: Colored 12 atoms.
PyMOL>set_color color32, [0,12,242]
 Color: "color32" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color32, resi 32
 Executive: Colored 17 atoms.
PyMOL>set_color color33, [0,12,242]
 Color: "color33" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color33, resi 33
 Executive: Colored 17 atoms.
PyMOL>set_color color34, [0,0,255]
 Color: "color34" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color34, resi 34
 Executive: Colored 7 atoms.
PyMOL>set_color color35, [0,0,255]
 Color: "color35" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color35, resi 35
 Executive: Colored 14 atoms.
PyMOL>set_color color36, [0,0,255]
 Color: "color36" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color36, resi 36
 Executive: Colored 10 atoms.
PyMOL>set_color color37, [0,0,255]
 Color: "color37" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color37, resi 37
 Executive: Colored 17 atoms.
PyMOL>set_color color38, [0,0,255]
 Color: "color38" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color38, resi 38
 Executive: Colored 17 atoms.
PyMOL>set_color color39, [0,0,255]
 Color: "color39" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 19 atoms.
PyMOL>set_color color40, [0,0,255]
 Color: "color40" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 14 atoms.
PyMOL>set_color color41, [0,0,255]
 Color: "color41" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color41, resi 41
 Executive: Colored 24 atoms.
PyMOL>set_color color42, [0,0,255]
 Color: "color42" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color42, resi 42
 Executive: Colored 12 atoms.
PyMOL>set_color color43, [0,0,255]
 Color: "color43" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color43, resi 43
 Executive: Colored 12 atoms.
PyMOL>set_color color44, [0,0,255]
 Color: "color44" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 16 atoms.
PyMOL>set_color color45, [0,216,38]
 Color: "color45" defined as [ 0.000, 0.847, 0.149 ].
PyMOL>color color45, resi 45
 Executive: Colored 11 atoms.
PyMOL>set_color color46, [0,12,242]
 Color: "color46" defined as [ 0.000, 0.047, 0.949 ].
PyMOL>color color46, resi 46
 Executive: Colored 17 atoms.
PyMOL>set_color color47, [132.5,38,82.5]
 Color: "color47" defined as [ 0.520, 0.149, 0.324 ].
PyMOL>color color47, resi 47
 Executive: Colored 19 atoms.
PyMOL>set_color color48, [146,19,89]
 Color: "color48" defined as [ 0.573, 0.075, 0.349 ].
PyMOL>color color48, resi 48
 Executive: Colored 19 atoms.
PyMOL>set_color color49, [0,89,165]
 Color: "color49" defined as [ 0.000, 0.349, 0.647 ].
PyMOL>color color49, resi 49
 Executive: Colored 15 atoms.
PyMOL>label 17/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.35 sec. = 10158.2 frames/hour (0.35 sec. accum.).
PyMOL>png Richardson_rama.png
 ScenePNG: wrote 800x800 pixel image to file "Richardson_rama.png".
PyMOL>quit