Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `ER382A_NMR_em_bcr3.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    MEMBRANE PROTEIN                        15-DEC-06   2JN0              
  > ReadCoordsPdb(): >> TITLE     SOLUTION NMR STRUCTURE OF THE YGDR PROTEIN FROM ESCHERICHIA           
  > ReadCoordsPdb(): >> TITLE    2 COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER382A.                   
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YGDR;                             
   1  > ReadCoordsPdb(): Counting models in file `ER382A_NMR_em_bcr3.pdb'; Model:    2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
  > ReadCoordsPdb(): After scanning there is(are) 20 model(s) 
  > ReadCoordsPdb(): what model do you want [(1 to 20) or all] ?_   > ReadCoordsPdb(): Reading *all* models in file ER382A_NMR_em_bcr3.pdb
  > ReadCoordsPdb(): Reading a total of (20) models in file
  > ReadCoordsPdb(): I'm reading!, model   0

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): --> 15360 ATOM records read from file
  > ReadCoordsPdb(): --> 15360 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > ReadCoordsPdb(): ** monomer, 1 [1] chains ** 


PdbStat> 
  > calc_order_parameters(): ... Evaluating Dihedrals

      CHAIN                                                              .GT.  SUM.GT.
   RES  ID DIH  S(phi)  S(psi)  S(chi1) S(chi2) S(chi3) S(chi4) S(chi5)  0.90     1.6 
   ----------------------------------------------------------------------------------- 
   ASP  A   1           0.229   0.253   0.344                                       
   TYR  A   2   0.891   0.422   0.568   0.557                                       
   VAL  A   3   0.464   0.935   0.290                                               
   MET  A   4   0.942   0.989   0.997   0.754   0.587                       4        4 
   ALA  A   5   0.989   0.990                                               5        5 
   THR  A   6   0.978   0.991   0.966                                       6        6 
   LYS  A   7   0.965   0.959   0.995   0.994   0.998   0.663               7        7 
   ASP  A   8   0.982   0.945   0.435   0.273                               8        8 
   GLY  A   9   0.955   0.917                                               9        9 
   ARG  A  10   0.914   0.995   0.943   0.956   0.220   0.782   0.998      10       10 
   MET  A  11   0.989   0.987   0.678   0.150   0.317                      11       11 
   ILE  A  12   0.987   0.992   0.999   0.926                              12       12 
   LEU  A  13   0.995   0.946   0.922   0.918                              13       13 
   THR  A  14   0.939   0.945   0.995                                      14       14 
   ASP  A  15   0.978   0.344   0.727   0.755                                       
   GLY  A  16   0.375   0.736                                                       
   LYS  A  17   0.859   0.958   0.782   0.705   0.511   0.508                       17 
   PRO  A  18   0.984   0.933   0.952   0.926                              18       18 
   GLU  A  19   0.976   0.991   0.702   0.235   0.425                      19       19 
   ILE  A  20   0.992   0.988   0.999   0.997                              20       20 
   ASP  A  21   0.986   0.941   0.501   0.392                              21       21 
   ASP  A  22   0.969   0.969   0.407   0.256                              22       22 
   ASP  A  23   0.975   0.964   0.335   0.234                              23       23 
   THR  A  24   0.959   0.989   0.653                                      24       24 
   GLY  A  25   0.987   0.987                                              25       25 
   LEU  A  26   0.986   0.973   0.987   0.796                              26       26 
   VAL  A  27   0.971   0.996   0.999                                      27       27 
   SER  A  28   0.998   0.990   0.837                                      28       28 
   TYR  A  29   0.981   0.984   0.994   0.989                              29       29 
   HIS  A  30   0.986   0.990   0.914   0.877                              30       30 
   ASP  A  31   0.988   0.987   0.947   0.928                              31       31 
   GLN  A  32   0.994   0.948   0.187   0.755   0.179                      32       32 
   GLN  A  33   0.953   0.974   0.485   0.194   0.176                      33       33 
   GLY  A  34   0.969   0.974                                              34       34 
   ASN  A  35   0.957   0.935   0.796   0.858                              35       35 
   ALA  A  36   0.959   0.986                                              36       36 
   MET  A  37   0.976   0.988   0.649   0.977   0.558                      37       37 
   GLN  A  38   0.985   0.979   0.937   0.825   0.127                      38       38 
   ILE  A  39   0.985   0.979   0.888   0.875                              39       39 
   ASN  A  40   0.988   0.994   0.823   0.502                              40       40 
   ARG  A  41   0.997   0.982   0.610   0.684   0.252   0.607   0.998      41       41 
   ASP  A  42   0.990   0.984   0.496   0.433                              42       42 
   ASP  A  43   0.988   0.966   0.684   0.609                              43       43 
   VAL  A  44   0.993   0.940   0.354                                      44       44 
   SER  A  45   0.927   0.984   0.997                                      45       45 
   GLN  A  46   0.930   0.936   0.580   0.509   0.215                      46       46 
   ILE  A  47   0.931   0.180   0.638   0.400                                       
   ILE  A  48   0.523   0.263   0.239   0.888                                       
   GLU  A  49   0.705   0.238   0.375   0.170   0.285                               
   ARG  A  50   0.259           0.436   0.426   0.530   0.666   0.997               


   Ranges: 2
     from:  A    4   to    A   14
     from:  A   18   to    A   46


PdbStat>   > do_average_coords(): Making average for backbone atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for backbone onto model  1 
  > do_average_coords(): Calc. average coordinates backbone 

 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  1 is: 0.534
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  2 is: 0.503
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  3 is: 0.640
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  4 is: 0.831
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  5 is: 0.696
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  6 is: 0.487
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  7 is: 0.432
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  8 is: 0.424
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model  9 is: 0.410 (*)
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 10 is: 0.477
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 11 is: 0.501
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 12 is: 0.521
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 13 is: 0.588
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 14 is: 0.626
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 15 is: 0.604
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 16 is: 0.624
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 17 is: 0.745
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 18 is: 0.485
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 19 is: 0.644
 > Kabsch RMSD of backbone atoms in res. A[4..14],A[18..46],for model 20 is: 0.589
 >
 > Kabsch RMSD statistics for 20 structures: 
 > Mean RMSD using as refer. str. `average' for res.[4..14],[18..46], is: 0.568 
 > Range of RMSD values to reference struct. is 0.410 to 0.831
  > do_average_coords(): Making average for heavy atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for heavy onto model  1 
  > do_average_coords(): Calc. average coordinates heavy 

 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  1 is: 1.009
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  2 is: 1.214
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  3 is: 1.191
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  4 is: 1.452
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  5 is: 1.158
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  6 is: 0.991
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  7 is: 0.990
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  8 is: 0.890 (*)
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model  9 is: 1.010
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 10 is: 0.958
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 11 is: 1.037
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 12 is: 0.972
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 13 is: 1.084
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 14 is: 1.101
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 15 is: 1.159
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 16 is: 1.152
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 17 is: 1.202
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 18 is: 1.181
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 19 is: 1.174
 > Kabsch RMSD of heavy atoms in res. A[4..14],A[18..46],for model 20 is: 1.158
 >
 > Kabsch RMSD statistics for 20 structures: 
 > Mean RMSD using as refer. str. `average' for res.[4..14],[18..46], is: 1.104 
 > Range of RMSD values to reference struct. is 0.890 to 1.452

PdbStat> 
PdbStat>  *END* of program detected, BYE! ...