Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `ER382A_NMR_em_bcr3.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    MEMBRANE PROTEIN                        15-DEC-06   2JN0              
  > ReadCoordsPdb(): >> TITLE     SOLUTION NMR STRUCTURE OF THE YGDR PROTEIN FROM ESCHERICHIA           
  > ReadCoordsPdb(): >> TITLE    2 COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER382A.                   
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YGDR;                             
   1  > ReadCoordsPdb(): Counting models in file `ER382A_NMR_em_bcr3.pdb'; Model:    2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
  > ReadCoordsPdb(): After scanning there is(are) 20 model(s) 
  > ReadCoordsPdb(): what model do you want [(1 to 20) or all] ?_   > ReadCoordsPdb(): I'm reading file ER382A_NMR_em_bcr3.pdb MODEL     1 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->   768 ATOM records read from file 
  > ReadCoordsPdb(): -->   768 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:      768 (237 C, 374 H, 85 O, 69 N, 3 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:      50 (Avg. mol. weight: 112.9)
  > INFO_mol: # -- M.W. :  5646.1 g/mol. (5.65 kD)     Estimated RoG <S2>:   9.73 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `ER382A_NMR_em_bcr3.pdb' model #1, TOTAL RESIDUES: 50
  > INFO_mol: Radius of Gyration <S2> :    10.4406  angstroms 
  > INFO_mol: Center of Masses: x_cm(1.112), y_cm(-0.059), z_cm(1.484) 

  > INFO_res:  DYVMATKDGR MILTDGKPEI DDDTGLVSYH DQQGNAMQIN RDDVSQIIER 
  > INFO_res:  
  > INFO_res:  
  > INFO_res:  ASP  TYR  VAL  MET  ALA  THR  LYS  ASP  GLY  ARG  MET  ILE  
  > INFO_res:  LEU  THR  ASP  GLY  LYS  PRO  GLU  ILE  ASP  ASP  ASP  THR  
  > INFO_res:  GLY  LEU  VAL  SER  TYR  HIS  ASP  GLN  GLN  GLY  ASN  ALA  
  > INFO_res:  MET  GLN  ILE  ASN  ARG  ASP  ASP  VAL  SER  GLN  ILE  ILE  
  > INFO_res:  GLU  ARG  
  > INFO_res:  
  > INFO_res:   2 ALA     3 ARG     2 ASN     9 ASP     4 GLN     2 GLU  
  > INFO_res:   4 GLY     1 HIS     5 ILE     2 LEU     2 LYS     3 MET  
  > INFO_res:   1 PRO     2 SER     3 THR     2 TYR     3 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat>   > locate_file(): file `ER382A_NMR_em_bcr3.upl' opened for reading 
       0 SANI-RDC constraints read 
     445 NOE-distance constraints (0 Ambiguous NOE/s) read 
     445 TOTAL constraints read 


PdbStat> 
 -------------- SUMMARY OF RESTRAINTS  --------------- 
 TOTAL NUMBER OF NOE RESTRAINTS            :   445
      INTRA-RESIDUE RESTRAINTS   (I=J)     :     1
      SEQUENTIAL    RESTRAINTS   (I-J)=1   :   140
          BACKBONE-BACKBONE                :        50
          BACKBONE-SIDE CHAIN              :        20
          SIDE CHAIN-SIDE CHAIN            :        70
      MEDIUM RANGE  RESTRAINTS  1<(I-J)<5  :    89
          BACKBONE-BACKBONE                :        15
          BACKBONE-SIDE CHAIN              :         5
          SIDE CHAIN-SIDE CHAIN            :        69
      LONG  RANGE   RESTRAINTS   (I-J)>=5  :   215
 TOTAL HYDROGEN BOND RESTRAINTS            :     0
      LONG RANGE H-BOND RESTR.   (I-J)>=5  :     0
 DISULFIDE RESTRAINTS                      :     0
 INTRA-CHAIN RESTRAINTS                    :   445
 INTER-CHAIN RESTRAINTS                    :     0
 AMBIGUOUS RESTRAINTS                      :     0
 ----------------------------------------------------- 
 ----------------------------------------------------- 
 ----------------------------------------------------- 


 RES   #    INTRA  INTER   seq     med    lng  InterChain
 ASP A    1      0    0.0    0.0    0.0    0.0    0.0
 TYR A    2      0    0.0    0.0    0.0    0.0    0.0
 VAL A    3      0    5.0    1.5    0.5    3.0    0.0
 MET A    4      0   15.0    2.5    0.0   12.5    0.0
 ALA A    5      0    6.5    1.5    0.5    4.5    0.0
 THR A    6      0   13.0    1.5    2.5    9.0    0.0
 LYS A    7      0    1.0    1.0    0.0    0.0    0.0
 ASP A    8      0    3.5    0.5    2.5    0.5    0.0
 GLY A    9      0    1.5    1.0    0.5    0.0    0.0
 ARG A   10      0   11.0    3.5    7.5    0.0    0.0
 MET A   11      0    7.5    4.0    1.0    2.5    0.0
 ILE A   12      0   17.5    4.0    4.5    9.0    0.0
 LEU A   13      0    9.5    3.5    1.0    5.0    0.0
 THR A   14      0   11.0    1.5    2.0    7.5    0.0
 ASP A   15      0    1.0    1.0    0.0    0.0    0.0
 GLY A   16      0    0.0    0.0    0.0    0.0    0.0
 LYS A   17      0    0.5    0.0    0.5    0.0    0.0
 PRO A   18      0    7.5    1.0    0.0    6.5    0.0
 GLU A   19      0    8.5    3.0    0.0    5.5    0.0
 ILE A   20      0   15.0    5.0    1.5    8.5    0.0
 ASP A   21      0   12.0    5.0    2.5    4.5    0.0
 ASP A   22      0    7.0    3.5    3.5    0.0    0.0
 ASP A   23      0    6.0    4.5    1.5    0.0    0.0
 THR A   24      0   10.0    4.5    5.5    0.0    0.0
 GLY A   25      0    7.0    3.0    2.5    1.5    0.0
 LEU A   26      0   17.5    4.0    3.0   10.5    0.0
 VAL A   27      0   22.0    3.0    1.0   18.0    0.0
 SER A   28      0   12.5    2.5    0.0   10.0    0.0
 TYR A   29      0   25.0    3.5    1.0   20.5    0.0
 HIS A   30      0    9.5    3.5    0.5    5.5    0.0
 ASP A   31      0    7.5    3.5    2.0    2.0    0.0
 GLN A   32      0    8.0    2.5    1.0    4.5    0.0
 GLN A   33      0   10.0    3.0    7.0    0.0    0.0
 GLY A   34      0    5.0    3.0    2.0    0.0    0.0
 ASN A   35      0   14.5    3.5   10.5    0.5    0.0
 ALA A   36      0    8.0    4.5    0.0    3.5    0.0
 MET A   37      0   16.0    6.0    3.5    6.5    0.0
 GLN A   38      0   16.5    7.0    0.0    9.5    0.0
 ILE A   39      0   26.5    8.0    3.5   15.0    0.0
 ASN A   40      0   10.5    6.5    1.0    3.0    0.0
 ARG A   41      0   12.0    2.5    3.0    6.5    0.0
 ASP A   42      0    3.5    2.5    1.0    0.0    0.0
 ASP A   43      0    8.0    4.0    3.5    0.5    0.0
 VAL A   44      0   18.0    5.0    4.0    9.0    0.0
 SER A   45      0    7.0    4.0    0.0    3.0    0.0
 GLN A   46      0    3.0    1.5    0.5    1.0    0.0
 ILE A   47      0    7.0    0.0    1.0    6.0    0.0
 ILE A   48      1    0.0    0.0    0.0    0.0    0.0
 GLU A   49      0    0.0    0.0    0.0    0.0    0.0
 ARG A   50      0    0.0    0.0    0.0    0.0    0.0
 TOTAL          1  444.0  140.0   89.0  215.0    0.0

  > ANALYZE_cns: Do you want a CONS.OUT file [default no] ?_