read coor pdb DRR147D_R3_em_bcr3.pdb
all
rmsd coor heavy 4A-23A,65A-70A,73A-78A,90A-97A,102A-109A,116A-124A,135A-146A
ave
resOrd_rmsd_heavy
rmsd coor backbone 4A-23A,65A-70A,73A-78A,90A-97A,102A-109A,116A-124A,135A-146A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit