Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   28-FEB-10   3LYW              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF YBBR FAMILY PROTEIN DHAF_0833 FROM               
  > ReadCoordsPdb(): >> TITLE    2 DESULFITOBACTERIUM HAFNIENSE DCB-2. NORTHEAST STRUCTURAL             
  > ReadCoordsPdb(): >> TITLE    3 GENOMICS CONSORTIUM TARGET ID DHR29B                                 
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->   669 ATOM records read from file 
  > ReadCoordsPdb(): -->   669 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:      669 (423 C, 0 H, 129 O, 113 N, 0 S, 0 Q, 4 Metals)
  > INFO_mol: # residues:      86 (Avg. mol. weight: 104.2)
  > INFO_mol: # -- M.W. :  8965.3 g/mol. (8.97 kD)     Estimated RoG <S2>:  11.95 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 86
  > INFO_mol: Radius of Gyration <S2> :    14.6261  angstroms 
  > INFO_mol: Center of Masses: x_cm(0.304), y_cm(23.412), z_cm(33.040) 

  > INFO_res:  RDPTLTLSLI AKNTPANSIT KLPSVRVKTE GYNPSINVNE LFAYVDLSGS 
  > INFO_res:  EPGEHDYEVK VEPIPNIKIV EISPRVVTLQ LEHH
  > INFO_res:  
  > INFO_res:  ARG  ASP  PRO  THR  LEU  THR  LEU  SER  LEU  ILE  ALA  LYS  
  > INFO_res:  ASN  THR  PRO  ALA  ASN  SER  MSE  ILE  MSE  THR  LYS  LEU  
  > INFO_res:  PRO  SER  VAL  ARG  VAL  LYS  THR  GLU  GLY  TYR  ASN  PRO  
  > INFO_res:  SER  ILE  ASN  VAL  ASN  GLU  LEU  PHE  ALA  TYR  VAL  ASP  
  > INFO_res:  LEU  SER  GLY  SER  GLU  PRO  GLY  GLU  HIS  ASP  TYR  GLU  
  > INFO_res:  VAL  LYS  VAL  GLU  PRO  ILE  PRO  ASN  ILE  LYS  ILE  VAL  
  > INFO_res:  GLU  ILE  SER  PRO  ARG  VAL  VAL  THR  LEU  GLN  LEU  GLU  
  > INFO_res:  HIS  HIS  
  > INFO_res:  
  > INFO_res:   3 ALA     3 ARG     6 ASN     3 ASP     1 GLN     8 GLU  
  > INFO_res:   3 GLY     3 HIS     7 ILE     8 LEU     5 LYS     1 PHE  
  > INFO_res:   8 PRO     7 SER     6 THR     3 TYR     9 VAL     2 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...