Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total2531
intra-residue [i = j]433
sequential [| i - j | = 1]592
medium range [1 < | i - j | < 5]536
long range [| i - j | ≥ 5]970
NOE constraints per restrained residue b30.9
Dihedral-angle constraints:116
Total number of restricting constraints b2647
Total number of restricting constraints per restrained residue b32.3
Restricting long-range constraints per restrained residue b11.8
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å12.05
0.2 - 0.5 Å1.3
> 0.5 Å0
RMS of distance violation / constraint0.01 Å
Maximum distance violation d0.40 Å
Dihedral angle violations / structure
1 - 10 °6.1
> 10 °0
RMS of dihedral angle violation / constraint0.45 °
Maximum dihedral angle violation d3.60 °
RPF scores
RecallPrecisionF-measureDP-score
0.8970.8490.8720.809
RMSD Values
allorderedeSelectedf
All backbone atoms1.3 Å0.4 Å0.4 Å
All heavy atoms1.9 Å0.7 Å0.7 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.19N/A-0.43
Procheck G-factor e (all dihedral angles)-0.25N/A-1.48
Verify3D0.440.0142-0.32
ProsaII (-ve)0.670.03220.08
MolProbity clashscore27.022.9885-3.11
General linear model RMSD prediction2.15
Ramachandran Plot Summary from Procheck f
Most favoured regions95.1%
Additionally allowed regions4.9%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98.4%
Allowed regions1.6%
Disallowed regions0%


a Analysed for residues 1 to 186
b There are 82 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 4A-15A,18A-28A,31A-41A,43A-82A,3B-15B,18B-41B,43B-77B
f Residues selected based on: User defined residues

Selected residue ranges: 4A-15A,18A-28A,31A-41A,43A-82A,3B-15B,18B-41B,43B-77B

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4