read coor pdb CCR55_R3_em_bcr3.pdb
all
rmsd coor heavy 3A-22A,25A-31A,40A-49A,56A-62A,69A-74A,80A-98A,109A-112A
ave
resOrd_rmsd_heavy
rmsd coor backbone 3A-22A,25A-31A,40A-49A,56A-62A,69A-74A,80A-98A,109A-112A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit