Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   31-MAR-08   3CPK              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE Q7W7N7_BORPA PROTEIN FROM                    
  > ReadCoordsPdb(): >> TITLE    2 BORDETELLA PARAPERTUSSIS. NORTHEAST STRUCTURAL GENOMICS              
  > ReadCoordsPdb(): >> TITLE    3 CONSORTIUM TARGET BER31                                              
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->   852 ATOM records read from file 
  > ReadCoordsPdb(): -->   852 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:      852 (541 C, 0 H, 157 O, 151 N, 3 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     118 (Avg. mol. weight: 95.1)
  > INFO_mol: # -- M.W. : 11220.9 g/mol. (11.22 kD)     Estimated RoG <S2>:  13.48 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 118
  > INFO_mol: Radius of Gyration <S2> :    13.1427  angstroms 
  > INFO_mol: Center of Masses: x_cm(21.168), y_cm(10.412), z_cm(44.657) 

  > INFO_res:  PATALNTVTA YGDGYIEVNQ VRFSHAIAFA PEGPVASWPV QRPADITASL 
  > INFO_res:  LQQAAGLAAP EVLLVGTGRR QHLLGPEQVR PLLAMGVGVE AMDTQAAART 
  > INFO_res:  YNILMAEGRR VVVALLPD
  > INFO_res:  
  > INFO_res:  PRO  ALA  THR  ALA  LEU  ASN  THR  VAL  THR  ALA  TYR  GLY  
  > INFO_res:  ASP  GLY  TYR  ILE  GLU  VAL  ASN  GLN  VAL  ARG  PHE  SER  
  > INFO_res:  HIS  ALA  ILE  ALA  PHE  ALA  PRO  GLU  GLY  PRO  VAL  ALA  
  > INFO_res:  SER  TRP  PRO  VAL  GLN  ARG  PRO  ALA  ASP  ILE  THR  ALA  
  > INFO_res:  SER  LEU  LEU  GLN  GLN  ALA  ALA  GLY  LEU  ALA  ALA  PRO  
  > INFO_res:  GLU  VAL  LEU  LEU  VAL  GLY  THR  GLY  ARG  ARG  GLN  HIS  
  > INFO_res:  LEU  LEU  GLY  PRO  GLU  GLN  VAL  ARG  PRO  LEU  LEU  ALA  
  > INFO_res:  MET  GLY  VAL  GLY  VAL  GLU  ALA  MET  ASP  THR  GLN  ALA  
  > INFO_res:  ALA  ALA  ARG  THR  TYR  ASN  ILE  LEU  MET  ALA  GLU  GLY  
  > INFO_res:  ARG  ARG  VAL  VAL  VAL  ALA  LEU  LEU  PRO  ASP  
  > INFO_res:  
  > INFO_res:  20 ALA     8 ARG     3 ASN     4 ASP     7 GLN     6 GLU  
  > INFO_res:  10 GLY     2 HIS     4 ILE    13 LEU     3 MET     2 PHE  
  > INFO_res:   9 PRO     3 SER     7 THR     3 TYR     1 TRP    13 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...