Running PDBSTAT from Linux Ayuda is on: /farm/software/Pdbstat_v3.24/PDBSTAT (C) (C) Pdbstat -- A program to evaluate some statistics of macromolecules, (C) given the cartesian coordinates. (C) (C) (c) Copyright 1992-2001 Roberto Tejero and Gaetano T. Montelione (C) Center for Advanced Technology and Medicine (CABM) (C) Rutgers University (C) ** VERSION: 3.24 2002/04/05 (Compiled on: troberto.cabm.rutgers.edu) ** ===============> W E L C O M E to PDBStat <================ PDBStat has become a tool able (between other things) of: a) read and interconvert between DISMAN, PDB, DISCOVER, IMPACT b) elaborate some info about the molecule as MW, Radius of gyration, .. c) investigate the setereochemical quality of a protein by evaluating phi, psi, chi1, impropers and chirality The sequence of acts should be: 1.- read a file (coords, constr) 2.- read a sequence file (can be free format) 3.- Follow menu (calculating, writing ...) NOTE: Be aware that if you read in a constraint file you *ALWAYS* need to read a sequence file also HAVE FUN AND ENJOY !! **** For more info type `help' or `menu' **** > MAIN: [rea]d [hel]p [his]tory [men]u [phi] [qui]t... > MAIN: ?_ > LOCATE_file: file `Zdom1.pdb' opened for reading > PDB_rdr: >> HEADER Structures from DYANA 07-05- 2 > PDB_rdr: >> REMARK 1 DYANA 1.5, 07-05- 2 > PDB_rdr: After scanning there are 10 models > PDB_rdr: what model do you want [(1 to 10) or all] ?_ > PDB_rdr: *** SUMMARY *** > PDB_rdr: --> 13130 ATOM records read from file > PDB_rdr: --> 11270 Regular IUPAC Atoms > PDB_rdr: --> 1860 Pseudo-atoms (DISMAN type) > PDB_rdr: --> 0 Lone pairs > PDB_rdr: Bye ... > MAIN: [rea]d [hel]p [his]tory [men]u [phi] [qui]t... > MAIN: ?_ > LOCATE_file: file `Zdom1.aco' opened for reading > CNSTR_rdr: Reading DYANA ACO file > CNSTR_rdr: #Manual Input > CNSTR_rdr: 20 LYS PHI -90.0 -30.0 > CNSTR_rdr: 78 constraints read > MAIN: [rea]d [hel]p [his]tory [men]u [phi] [qui]t... > MAIN: ?_ > MAIN: [rea]d [hel]p [his]tory [men]u [phi] [qui]t... > MAIN: ?_ > MAIN: [rea]d [hel]p [his]tory [men]u [phi] [qui]t... > MAIN: ?_ > MAIN: *END* of program detected, BYE! ...